Design
Model biological functions and compose genetic network designs.
Selected tools
- LOICA
Platform Ecosystem
Our tools form a modular platform ecosystem for designing, building, testing, learning from, and sharing programmable biological systems. This catalog is synchronized from the public DRAGGON Lab GitHub organization whenever the website is deployed, with the last successful snapshot retained if GitHub is temporarily unavailable.
DBTL Cycle
Select a workflow stage or the infrastructure core to reveal more information.
Build
Translate designs into reproducible assembly and automation plans.
Selected tools
- PUDU
- BuildCompiler
Test
Capture measurements, metadata, and characterization workflows.
Selected tools
- Flapjack
- Tricahue
Learn
Turn standardized results into datasets, models, and next designs.
Selected tools
- SeqTrainer
- AI/ML
Infrastructure
Standards, repositories, metadata, automation, and FAIR data across every stage.
Selected tools
- SynBioSuite
- SynBioHub
- SBOL
Search across repository names, descriptions, development stages, and languages.
SBOL3 to agent-based simulations
Languages: Jupyter Notebook 74%, Python 26%
ATCG-FM is a research workspace for genomic foundation models.
Languages: Python 87.7%, Jupyter Notebook 12.3%
CellModeller2 is a GPU-accelerated multicellular modelling framework with independent implementations for Apple Metal, NVIDIA CUDA, and the CPU
Languages: Python 40.4%, C++ 24.9%, Cuda 13%, Objective-C++ 8.6%, TypeScript 5.2%, Metal 4.2%, Shell 1.2%, CMake 1.1%, CSS 0.9%, HTML 0.6%
Logical Operators for Integrated Cell Algorithms
Languages: Jupyter Notebook 97.7%, Python 2.3%
This package extracts experimental data and metadata, converts to stardard formats, uploads to SynBioHub and Flapjack, and connects them
Languages: Jupyter Notebook 88.3%, Python 11.7%
Python package for handling SBOL on Inventoris linking physical and digital assets.
Languages: Python 93.6%, Jupyter Notebook 6.4%
No description provided on GitHub.
Languages: Jupyter Notebook 92.1%, Python 7.9%
GG Circuit is a desktop IDE for building genetic and genomic networks
Languages: TypeScript 61.6%, Rust 35.9%, CSS 1.4%, Shell 0.6%, Python 0.4%, HTML 0.1%, JavaScript 0.1%
DNA plotting library for Python
Languages: Python 92.2%, HTML 6.9%, Perl 0.4%, CSS 0.3%, Shell 0.2%
No description provided on GitHub.
Languages: No language data available
No language data available
Python package interfacing the flapjack API with pandas and the numpy stack.
Languages: Jupyter Notebook 75.6%, Python 24.4%
Courses, workshops, tutorials and more on Engineering Biology
Languages: No language data available
No language data available
No description provided on GitHub.
Languages: Python 98.6%, Jupyter Notebook 1.4%
Software tool for DNA annotation using standards.
Languages: No language data available
No language data available
WebCM is a web platform used to develop and run bacterial simulations
Languages: JavaScript 43.5%, Python 35.9%, HTML 7.1%, CSS 6.9%, GLSL 6.7%
Repository with Flapjack backend and frontend.
Languages: Python 55.6%, JavaScript 42.7%, SCSS 1%, Dockerfile 0.3%, HTML 0.2%, CSS 0.1%, Shell 0%
Python package to handle synthetic biology inventory using standards
Languages: No language data available
No language data available
Software tool to predict promoters and promoter activity
Languages: TypeScript 54.9%, Python 37.4%, CSS 6.4%, Makefile 0.9%, JavaScript 0.5%
Software tool to predict operator sites and their dose response effect on gene expression using protein-DNA binding affinity.
Languages: No language data available
No language data available
Software tool to infer genetic networks
Languages: No language data available
No language data available